absee 1.0

absee has underwent a lot of structural changes.

First, it only retrieves the information you want instead of returning all traces and called bases.
Second, it’s a class now, so you can hold onto multiple sequencing data.
Third, it now has quality scores.

%irb
>> require ‘absee’
=> true
>> my_variable = ABSee.new()
=> #<ABSee:0x000001008599d0>
>> my_variable.read("/Users/Jenny/Desktop/my_sequence.ab1")
=> nil
>> my_variable.get_calledSequence()

Class Methods

• read(file_location)
  • returns nil
• get_traceA()
  • returns an array with the trace data for adenine
• get_traceG()
  • returns an array with the trace data for guanine
• get_traceC()
  • returns an array with the trace data for cytosine
• get_traceT()
  • returns an array with the trace data for thymine
• get_calledSequence()
  • returns an array with the Basecalled sequence
• get_qualityScores()
  • returns an array with the Basecalled quality scores
• get_peakIndexes()
  returns an array with indexes of the called sequence in the trace